Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| comK | fliJ | BSU10420 | BSU16250 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | 0.531 |
| comK | yhaH | BSU10420 | BSU10000 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Putative membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. | 0.590 |
| comK | yjbA | BSU10420 | BSU11410 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Putative nucleic acid binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor; Belongs to the UPF0736 family. | 0.663 |
| comK | ylxL | BSU10420 | BSU16480 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Coupling factor for flagellin transcription and translation; Required for swarming motility and for maximal sigma-D activity. | 0.555 |
| comK | yqzC | BSU10420 | BSU24940 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.721 |
| comK | yqzD | BSU10420 | BSU24930 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.535 |
| comK | yrrS | BSU10420 | BSU27300 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 14679248. | 0.503 |
| comK | ysoA | BSU10420 | BSU28240 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Putative hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.679 |
| comK | ytlQ | BSU10420 | BSU29950 | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | Putative hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.577 |
| fliJ | comK | BSU16250 | BSU10420 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | 0.531 |
| fliJ | yjbA | BSU16250 | BSU11410 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Putative nucleic acid binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor; Belongs to the UPF0736 family. | 0.755 |
| fliJ | ylqG | BSU16250 | BSU16070 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Putative glycosyltransferase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.824 |
| fliJ | ylxL | BSU16250 | BSU16480 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Coupling factor for flagellin transcription and translation; Required for swarming motility and for maximal sigma-D activity. | 0.877 |
| fliJ | yqzC | BSU16250 | BSU24940 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.698 |
| fliJ | yqzD | BSU16250 | BSU24930 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.721 |
| fliJ | yrrS | BSU16250 | BSU27300 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 14679248. | 0.722 |
| fliJ | ysoA | BSU16250 | BSU28240 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Putative hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.763 |
| fliJ | ytlQ | BSU16250 | BSU29950 | Flagellar synthesis chaperone; Flagellar protein that affects chemotactic events. | Putative hydrolase; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe: putative enzyme. | 0.793 |
| yhaH | comK | BSU10000 | BSU10420 | Putative membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. | Competence transcription factor (CTF); A master regulator required for the expression of late competence genes including comC, comE, comG and the bdbDC operon. Receives signals from SrfA, and possibly other regulatory COM genes, and transduces these signals to the late COM genes. Represses transcription of rok. May repress expression of a few genes. | 0.590 |
| yhaH | yjbA | BSU10000 | BSU11410 | Putative membrane protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component. | Putative nucleic acid binding protein; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf: putative factor; Belongs to the UPF0736 family. | 0.497 |
page 1 of 6