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cshB protein (Bacillus subtilis) - STRING interaction network
"cshB" - DEAD-box ATP-dependent RNA helicase CshB in Bacillus subtilis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cshBDEAD-box ATP-dependent RNA helicase CshB; DEAD-box RNA helicase that plays a role in 70S ribosome assembly. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures (438 aa)    
Predicted Functional Partners:
nfo
Probable endonuclease 4; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5’-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (297 aa)
         
  0.957
pnpA
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3’- to 5’-direction. Necessary for competence development in Bacillus subtilis. May be necessary for modification of the srfA transcript (stabilization or translation activation) (705 aa)
   
 
  0.755
yfhS
Uncharacterized protein YfhS; Evidence 4- Homologs of previously reported genes of unknown function; PubMedId- 10463184 (74 aa)
           
  0.681
rsmB
Probable ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA (447 aa)
 
 
  0.669
ycdF
Glucose 1-dehydrogenase 2; Evidence 3- Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe- putative enzyme (258 aa)
           
  0.661
antE
Protein AntE; Evidence 5- No homology to any previously reported sequences; PubMedId- 9864351 (98 aa)
           
  0.631
aldY
Uncharacterized aldehyde dehydrogenase AldY; May contribute to protect cells against stress due to ethanol and related compounds (485 aa)
       
 
  0.599
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis; Belongs to the IspH family (314 aa)
   
        0.600
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (309 aa)
 
 
  0.584
yqfQ
Uncharacterized protein YqfQ; Evidence 4- Homologs of previously reported genes of unknown function (247 aa)
              0.583
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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