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trmK protein (Bacillus subtilis) - STRING interaction network
"trmK" - tRNA in Bacillus subtilis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
trmKtRNA (adenine(22)-N(1))-methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 22 (m1A22) in tRNA (216 aa)    
Predicted Functional Partners:
yqfO
GTP cyclohydrolase 1 type 2 homolog; Evidence 4- Homologs of previously reported genes of unknown function (373 aa)
 
        0.927
ylaF
Uncharacterized protein YlaF; Evidence 4- Homologs of previously reported genes of unknown function (62 aa)
           
  0.860
yheB
UPF0754 membrane protein YheB; Evidence 4- Homologs of previously reported genes of unknown function; PubMedId- 16684363 (377 aa)
           
  0.860
ykyA
Uncharacterized lipoprotein YkyA; Evidence 3- Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pf - putative factor (223 aa)
           
  0.851
yvcD
TPR repeat-containing protein YvcD; Evidence 4- Homologs of previously reported genes of unknown function (484 aa)
         
  0.836
yhfK
Uncharacterized sugar epimerase YhfK; Evidence 3- Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pe - putative enzyme (214 aa)
           
  0.836
dusB
Probable tRNA-dihydrouridine synthase 1; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines (333 aa)
   
     
  0.693
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (247 aa)
           
  0.689
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif (288 aa)
           
  0.670
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family (213 aa)
 
     
  0.651
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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