STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yrzQConserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. (43 aa)    
Predicted Functional Partners:
ytzL
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
   
  
 0.984
yrzR
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.978
yrrD
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
  
    0.844
ykzP
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
   
    0.748
ypzG
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
   
    0.687
yuzM
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
   
    0.604
yhcN
Putative lipoprotein; Probably contributes, directly or indirectly, to early events in germination. May play a role in spore outgrowth.
   
    0.599
ykzE
Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function.
   
    0.594
ypzF
Hypothetical protein; Evidence 5: No homology to any previously reported sequences.
   
    0.563
recD
Exodeoxyribonuclease V alpha chain; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.550
Your Current Organism:
Bacillus subtilis 168
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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