Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| spoIIID | spoIVA | BSU36420 | BSU22800 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | 0.968 |
| spoIIID | spoVAEB | BSU36420 | BSU23402 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | 0.769 |
| spoIIID | ylbJ | BSU36420 | BSU15030 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Putative factor required for spore cortex formation; Required for spore cortex formation. | 0.861 |
| spoIIID | ylmC | BSU36420 | BSU15360 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12429060. | 0.848 |
| spoIIID | ytfJ | BSU36420 | BSU29500 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.871 |
| spoIIID | yunB | BSU36420 | BSU32350 | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | Putative protein involved in spore formation; Required for sporulation. | 0.767 |
| spoIVA | spoIIID | BSU22800 | BSU36420 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | 0.968 |
| spoIVA | spoVAEB | BSU22800 | BSU23402 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | 0.775 |
| spoIVA | ydcC | BSU22800 | BSU04630 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Putative lipoprotein; required for efficient sporulation. | 0.453 |
| spoIVA | ylbJ | BSU22800 | BSU15030 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Putative factor required for spore cortex formation; Required for spore cortex formation. | 0.844 |
| spoIVA | ylmC | BSU22800 | BSU15360 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12429060. | 0.778 |
| spoIVA | ytfJ | BSU22800 | BSU29500 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.764 |
| spoIVA | yunB | BSU22800 | BSU32350 | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | Putative protein involved in spore formation; Required for sporulation. | 0.756 |
| spoVAEB | spoIIID | BSU23402 | BSU36420 | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | Transcriptional regulator; This protein regulates the transcription of sigK, which encodes mother cell chamber RNA polymerase sigma-factor (sigma K). | 0.769 |
| spoVAEB | spoIVA | BSU23402 | BSU22800 | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | 0.775 |
| spoVAEB | ylbJ | BSU23402 | BSU15030 | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | Putative factor required for spore cortex formation; Required for spore cortex formation. | 0.647 |
| spoVAEB | ylmC | BSU23402 | BSU15360 | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function; PubMedId: 12429060. | 0.757 |
| spoVAEB | ytfJ | BSU23402 | BSU29500 | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | Conserved hypothetical protein; Evidence 4: Homologs of previously reported genes of unknown function. | 0.471 |
| spoVAEB | yunB | BSU23402 | BSU32350 | Spore germinant protein; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process. | Putative protein involved in spore formation; Required for sporulation. | 0.755 |
| ydcC | spoIVA | BSU04630 | BSU22800 | Putative lipoprotein; required for efficient sporulation. | Morphogenetic stage IV sporulation protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat outer layers. Its ATP hydrolysis is required for proper assembly of the spore coat. Forms a basement layer around the outside surface of the forespore and self-assembles irreversibly into higher order structures by binding and hydrolyzing ATP thus creating a durable and stable platform upon which thereafter morphogenesis of the coat can take place. Required for proper localization of spore coat protein CotE and sporulation-specific proteins including SpoVM. | 0.453 |
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