STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yvgTUPF0126 membrane protein YvgT; Evidence 3: Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Product type pm: putative membrane component (202 aa)    
Predicted Functional Partners:
ycsF
Putative nitrogen-containing heterocycle degradation enzyme; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate
      
 0.784
ydaB
Putative acyl-coa ligase; Belongs to the ATP-dependent AMP-binding enzyme family
      
 0.749
yrbD
Putative sodium/proton-dependent alanine carrier protein YrbD; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; Product type t : transporter
   
  
 0.717
appD
Peptide/nickel transport system atp-binding protein; This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transporting tripeptides. Probably responsible for energy coupling to the transport system
      
 0.713
yuiA
Conserved hypothetical protein; Uncharacterized protein YuiA; Evidence 4: Homologs of previously reported genes of unknown function
      
 0.713
ysnD
Inner spore coat protein; Uncharacterized protein YsnD; Evidence 1a: Function experimentally demonstrated in the studied strain; Product type cp: cell process
      
 0.702
pucH
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring
      
 0.619
dtpT
Proton-dependent oligopeptide transporter, pot family; Uncharacterized transporter YclF; Evidence 2a: Function of homologous gene experimentally demonstrated in an other organism; Product type t: transporter
  
  
 0.618
pucR
Pucr family transcriptional regulator, purine catabolism regulatory protein; Activates the expression of pucFG, pucH, pucI, pucJKLM and guaD, while it represses pucABCDE and its own expression
      
 0.587
capB
Capsular polyglutamate synthetase (atp-dependent amide ligase); Catalyzes the biosynthesis of PGA (gamma-polyglutamic acid) from L-glutamate. Both the 44-kDa and the 33-kDa forms are required for PGA synthesis
      
 0.510
Your Current Organism:
Bacillus subtilis
NCBI taxonomy Id: 224308
Other names: B. subtilis subsp. subtilis str. 168, Bacillus subtilis 168, Bacillus subtilis subsp. subtilis 168, Bacillus subtilis subsp. subtilis str. 168, Bacillus subtilis subsp. subtilis str. BGSC 1A700
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