Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aq_1526 | dinG | aq_1526 | aq_358 | Hypothetical protein. | ATP-dependent helicase (DinG family). | 0.819 |
aq_1526 | lig | aq_1526 | aq_1394 | Hypothetical protein. | DNA ligase (ATP dependent); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.874 |
aq_1526 | pol | aq_1526 | aq_1628 | Hypothetical protein. | DNA polymerase I 3'-5' exo domain; 5'-3' exonuclease acting preferentially on double-stranded DNA. | 0.895 |
aq_1526 | polA | aq_1526 | aq_1967 | Hypothetical protein. | DNA polymerase I (PolI). | 0.440 |
aq_1526 | rad50 | aq_1526 | aq_1006 | Hypothetical protein. | Hypothetical protein; Involved in DNA double-strand break repair (DSBR). The Rad50/Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and/or repositioning DNA ends into the Mre11 active site (By similarity). Belongs to the SMC family. RAD50 subfamily. | 0.657 |
aq_1526 | recA | aq_1526 | aq_2150 | Hypothetical protein. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.726 |
aq_1526 | sbcD | aq_1526 | aq_1886 | Hypothetical protein. | ATP-dependent dsDNA exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.754 |
aq_1526 | topA | aq_1526 | aq_657 | Hypothetical protein. | Topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoi [...] | 0.741 |
aq_1691 | dinG | aq_1691 | aq_358 | Hypothetical protein. | ATP-dependent helicase (DinG family). | 0.817 |
aq_1691 | rad50 | aq_1691 | aq_1006 | Hypothetical protein. | Hypothetical protein; Involved in DNA double-strand break repair (DSBR). The Rad50/Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and/or repositioning DNA ends into the Mre11 active site (By similarity). Belongs to the SMC family. RAD50 subfamily. | 0.647 |
cutA | rad50 | aq_1005 | aq_1006 | Periplasmic divalent cation tolerance protein. | Hypothetical protein; Involved in DNA double-strand break repair (DSBR). The Rad50/Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and/or repositioning DNA ends into the Mre11 active site (By similarity). Belongs to the SMC family. RAD50 subfamily. | 0.773 |
dinG | aq_1526 | aq_358 | aq_1526 | ATP-dependent helicase (DinG family). | Hypothetical protein. | 0.819 |
dinG | aq_1691 | aq_358 | aq_1691 | ATP-dependent helicase (DinG family). | Hypothetical protein. | 0.817 |
dinG | lig | aq_358 | aq_1394 | ATP-dependent helicase (DinG family). | DNA ligase (ATP dependent); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | 0.772 |
dinG | pol | aq_358 | aq_1628 | ATP-dependent helicase (DinG family). | DNA polymerase I 3'-5' exo domain; 5'-3' exonuclease acting preferentially on double-stranded DNA. | 0.967 |
dinG | rad50 | aq_358 | aq_1006 | ATP-dependent helicase (DinG family). | Hypothetical protein; Involved in DNA double-strand break repair (DSBR). The Rad50/Mre11 complex possesses single-strand endonuclease activity and ATP-dependent double-strand-specific 3'-5' exonuclease activity. Rad50 provides an ATP-dependent control of Mre11 by unwinding and/or repositioning DNA ends into the Mre11 active site (By similarity). Belongs to the SMC family. RAD50 subfamily. | 0.689 |
dinG | recA | aq_358 | aq_2150 | ATP-dependent helicase (DinG family). | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.738 |
dinG | sbcD | aq_358 | aq_1886 | ATP-dependent helicase (DinG family). | ATP-dependent dsDNA exonuclease; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.967 |
dinG | topA | aq_358 | aq_657 | ATP-dependent helicase (DinG family). | Topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoi [...] | 0.752 |
lig | aq_1526 | aq_1394 | aq_1526 | DNA ligase (ATP dependent); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. | Hypothetical protein. | 0.874 |
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