STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcT3ABC transporter (ABC-2 subfamily). (256 aa)    
Predicted Functional Partners:
abcT4
ABC transporter.
 
 0.999
mtfA
Mannosyltransferase A.
 
  
 0.816
otnA
Polysaccharide biosynthesis protein (fragment).
  
  
 0.800
otnA-2
Polysaccharide biosynthesis protein.
  
  
 0.800
aq_1079
Putative protein.
 
     0.720
aq_1080
Putative protein.
 
  
 0.647
abcT5
ABC transporter (hlyB subfamily).
 
     0.615
xanB
Mannose-6-phosphate isomerase/mannose-1-phosphate guanyl transferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.552
mtfB
Mannosyltransferase B.
 
  
 0.528
mtfC
Mannosyltransferase C.
 
  
 0.512
Your Current Organism:
Aquifex aeolicus
NCBI taxonomy Id: 224324
Other names: A. aeolicus VF5, Aquifex aeolicus VF5, Aquifex aeolicus str. VF5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.