aq_1259 protein (Aquifex aeolicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

aq_1259

Putative protein. (436 aa)

Predicted Functional Partners:

aq_1263

0.915

aq_1258

0.785

aq_1262

0.743

aq_1453

0.677

aq_1264

0.637

oprC

0.587

metG

0.559

pal

0.503

hoxX

0.464

aq_050

0.453

Your Current Organism:

Aquifex aeolicus

NCBI taxonomy Id: 224324
Other names: A. aeolicus VF5, Aquifex aeolicus VF5, Aquifex aeolicus str. VF5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
aq_050	aq_1259	aq_050	aq_1259	Putative protein.	Putative protein.	0.453
aq_050	pal	aq_050	aq_2147	Putative protein.	Peptidoglycan associated lipoprotein.	0.542
aq_1258	aq_1259	aq_1258	aq_1259	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Putative protein.	0.785
aq_1258	aq_1262	aq_1258	aq_1262	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Putative protein.	0.443
aq_1258	aq_1263	aq_1258	aq_1263	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Putative protein.	0.843
aq_1258	aq_1264	aq_1258	aq_1264	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	Putative protein.	0.478
aq_1258	metG	aq_1258	aq_1257	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	methionyl-tRNA synthetase alpha subunit; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.777
aq_1259	aq_050	aq_1259	aq_050	Putative protein.	Putative protein.	0.453
aq_1259	aq_1258	aq_1259	aq_1258	Putative protein.	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.785
aq_1259	aq_1262	aq_1259	aq_1262	Putative protein.	Putative protein.	0.743
aq_1259	aq_1263	aq_1259	aq_1263	Putative protein.	Putative protein.	0.915
aq_1259	aq_1264	aq_1259	aq_1264	Putative protein.	Putative protein.	0.637
aq_1259	aq_1453	aq_1259	aq_1453	Putative protein.	Putative protein.	0.677
aq_1259	hoxX	aq_1259	aq_1156	Putative protein.	Hydrogenase regulation HoxX; Belongs to the enoyl-CoA hydratase/isomerase family.	0.464
aq_1259	metG	aq_1259	aq_1257	Putative protein.	methionyl-tRNA synthetase alpha subunit; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.	0.559
aq_1259	oprC	aq_1259	aq_529	Putative protein.	Outer membrane protein c.	0.587
aq_1259	pal	aq_1259	aq_2147	Putative protein.	Peptidoglycan associated lipoprotein.	0.503
aq_1262	aq_1258	aq_1262	aq_1258	Putative protein.	Putative protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.	0.443
aq_1262	aq_1259	aq_1262	aq_1259	Putative protein.	Putative protein.	0.743
aq_1262	aq_1263	aq_1262	aq_1263	Putative protein.	Putative protein.	0.773