Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aq_1571Putative protein. (226 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase large subunit.
       0.773
aq_1569
Putative protein.
       0.773
aq_1570
Putative protein.
       0.773
aq_1262
Putative protein.
  
    0.696
aq_716
Putative protein.
  
     0.683
aq_1558
Putative protein.
       0.671
mglA1
Gliding motility protein.
       0.671
aq_1562
Putative protein.
       0.671
abcT13
ABC transporter (MsbA subfamily).
       0.671
cysM
Cysteine synthase, O-acetylserine (thiol) lyase B.
       0.594
Your Current Organism:
Aquifex aeolicus
NCBI taxonomy Id: 224324
Other names: A. aeolicus VF5, Aquifex aeolicus VF5, Aquifex aeolicus str. VF5
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