STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tapBType IV pilus assembly protein TapB. (566 aa)    
Predicted Functional Partners:
pilC1
Fimbrial assembly protein PilC.
 
 0.966
pilC2
Fimbrial assembly protein PilC2.
 
 0.965
pilD
Type 4 prepilin peptidase.
 
 
 0.834
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.773
aq_1974
Putative protein.
       0.773
aq_585
Hypothetical protein; Belongs to the bacterial secretin family.
 
 
 
 0.677
gspG
General secretion pathway protein G.
 
 
 0.666
ppdD3
Pilin.
  
 
 0.617
aq_1436
Putative protein.
  
 
 0.617
aq_2118
Putative protein.
  
 
 0.617
Your Current Organism:
Aquifex aeolicus
NCBI taxonomy Id: 224324
Other names: A. aeolicus VF5, Aquifex aeolicus VF5, Aquifex aeolicus str. VF5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.