Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0010Predicted coding region AF_0010; Hypothetical protein; identified by GeneMark; putative. (597 aa)    
Predicted Functional Partners:
AF_0012
Predicted coding region AF_0012; Hypothetical protein; identified by GeneMark; putative.
 
  
 0.893
AF_0011
Corrinoid methyltransferase protein (mtaC-2); Similar to GP:1707580 percent identity: 29.55; identified by sequence similarity; putative.
 
    0.885
AF_0007
Predicted coding region AF_0007; Hypothetical protein; identified by GeneMark; putative.
 
  
 0.874
AF_0006
Corrinoid methyltransferase protein (mtaC-1); Similar to GP:1707580 percent identity: 30.68; identified by sequence similarity; putative.
 
  
 0.864
AF_0008
Oxalate/formate antiporter (oxlT-1); Similar to GP:1235993 percent identity: 25.71; identified by sequence similarity; putative.
  
  
 0.864
AF_0009
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase (mtr) {Methanobacterium thermoautotro; Similar to PID:668979 GB:AE000666 percent identity: 42.09; identified by sequence similarity; putative.
     
 0.860
AF_0013
Hexuronate transporter (exuT); Similar to SP:P42609 PID:606034 PID:1160319 GB:U00096 PID:2367193 percent identity: 24.53; identified by sequence similarity; putative.
  
  
 0.793
cdhE
acetyl-CoA decarbonylase/synthase, subunit gamma (cdhE); Part of a complex that catalyzes the reversible cleavage of acetyl-CoA, allowing autotrophic growth from CO(2).
   
 0.719
AF_0177
Tungsten formylmethanofuran dehydrogenase, subunit E (fwdE); Similar to GP:1702945 percent identity: 29.75; identified by sequence similarity; putative.
  
   
 0.532
AF_1649
Tungsten formylmethanofuran dehydrogenase, subunit G (fwdG); Similar to PID:871460 GB:AE000666 PID:1890208 percent identity: 45.57; identified by sequence similarity; putative.
  
   
 0.502
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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