STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0013Hexuronate transporter (exuT); Similar to SP:P42609 PID:606034 PID:1160319 GB:U00096 PID:2367193 percent identity: 24.53; identified by sequence similarity; putative. (399 aa)    
Predicted Functional Partners:
AF_0008
Oxalate/formate antiporter (oxlT-1); Similar to GP:1235993 percent identity: 25.71; identified by sequence similarity; putative.
 
  
 0.840
AF_0010
Predicted coding region AF_0010; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.793
AF_0009
N5-methyltetrahydromethanopterin:coenzyme M methyltransferase (mtr) {Methanobacterium thermoautotro; Similar to PID:668979 GB:AE000666 percent identity: 42.09; identified by sequence similarity; putative.
     
 0.785
AF_0012
Predicted coding region AF_0012; Hypothetical protein; identified by GeneMark; putative.
 
    0.773
AF_0011
Corrinoid methyltransferase protein (mtaC-2); Similar to GP:1707580 percent identity: 29.55; identified by sequence similarity; putative.
  
    0.736
AF_0007
Predicted coding region AF_0007; Hypothetical protein; identified by GeneMark; putative.
 
  
 0.707
AF_0006
Corrinoid methyltransferase protein (mtaC-1); Similar to GP:1707580 percent identity: 30.68; identified by sequence similarity; putative.
  
  
 0.670
AF_0015
Proline permease (putP-1); Similar to percent identity: 26.18; identified by sequence similarity; putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
  
 0.625
AF_0016
Predicted coding region AF_0016; Hypothetical protein; identified by GeneMark; putative.
 
     0.534
AF_0014
Predicted coding region AF_0014; Hypothetical protein; identified by GeneMark; putative.
       0.531
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.