Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0020L-carnitine dehydratase (caiB-1); Similar to GB:D10483 SP:P31572 GB:X67748 GB:X73904 PID:216463 percent identity: 33.25; identified by sequence similarity; putative. (420 aa)    
Predicted Functional Partners:
AF_0018
3-ketoacyl-CoA thiolase (acaB-1); Similar to GB:L77117 PID:1592180 percent identity: 41.02; identified by sequence similarity; putative.
  
  
 0.801
AF_0019
Conserved hypothetical protein; Similar to PID:1163919 percent identity: 28.70; identified by sequence similarity; putative.
       0.784
AF_0017
3-hydroxyacyl-CoA dehydrogenase (hbd-1); Similar to PID:1055222 SP:P52041 percent identity: 42.11; identified by sequence similarity; putative; Belongs to the enoyl-CoA hydratase/isomerase family.
  
  
 0.739
AF_0016
Predicted coding region AF_0016; Hypothetical protein; identified by GeneMark; putative.
       0.701
AF_0021
Signal-transducing histidine kinase; Similar to PID:950652 percent identity: 26.11; identified by sequence similarity; putative.
  
    0.654
AF_0015
Proline permease (putP-1); Similar to percent identity: 26.18; identified by sequence similarity; putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.565
AF_0014
Predicted coding region AF_0014; Hypothetical protein; identified by GeneMark; putative.
       0.550
AF_0807
L-lactate dehydrogenase, cytochrome-type (lldD); Similar to SP:P33232 GB:L13970 PID:404695 PID:466743 GB:U00096 percent identity: 39.41; identified by sequence similarity; putative.
 
 
 0.487
AF_1720
Acetolactate synthase, large subunit (ilvB-1); Similar to GB:L77117 SP:Q57725 PID:1591003 percent identity: 57.48; identified by sequence similarity; putative.
  
 
 0.464
AF_1780
Acetolactate synthase, large subunit (ilvB-2); Similar to GB:L77117 SP:Q57725 PID:1591003 percent identity: 32.06; identified by sequence similarity; putative; Belongs to the TPP enzyme family.
  
 
 0.464
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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