Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0042Polysaccharide ABC transporter, permease protein (rfbA-1); Similar to PID:765058 SP:Q48478 percent identity: 27.53; identified by sequence similarity; putative. (254 aa)    
Predicted Functional Partners:
AF_0041
Polysaccharide ABC transporter, ATP-binding protein (rfbB-1); Similar to GP:1235661 percent identity: 42.49; identified by sequence similarity; putative.
 0.999
AF_0290
Polysaccharide ABC transporter, ATP-binding protein (rfbB-2); Similar to PID:1653127 percent identity: 43.93; identified by sequence similarity; putative.
 
 0.987
AF_0289
Polysaccharide ABC transporter, permease protein (rfbA-2); Similar to PID:567182 SP:Q48475 percent identity: 28.46; identified by sequence similarity; putative.
  
  
 
0.903
AF_0043
First mannosyl transferase (wbaZ-1); Similar to GB:X61917 PID:47012 percent identity: 30.03; identified by sequence similarity; putative.
  
  
 0.705
AF_0321
Glycosyl transferase; Similar to GP:1666509 percent identity: 30.69; identified by sequence similarity; putative.
 
  
 0.607
AF_0322
Rhamnosyl transferase (rfbQ); Similar to GB:L07293 PID:152781 percent identity: 27.54; identified by sequence similarity; putative.
  
  
 0.547
AF_0045
Mannosyltransferase A (mtfA); Similar to PID:598470 percent identity: 38.74; identified by sequence similarity; putative.
 
  
 0.515
AF_0046
Predicted coding region AF_0046; Hypothetical protein; identified by GeneMark; putative.
 
     0.430
AF_0039
dolichol-P-glucose synthetase, putative; Similar to GB:L77117 SP:Q58619 PID:1591853 percent identity: 33.68; identified by sequence similarity; putative.
 
  
 0.426
AF_0328
dolichol-P-glucose synthetase, putative; Similar to GB:L77117 SP:Q58619 PID:1591853 percent identity: 38.99; identified by sequence similarity; putative.
 
  
 0.422
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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