STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_00912-hydroxyhepta-2,4-diene-1,7-dioate isomerase (hpcE-1); Similar to GB:L77117 PID:1500558 percent identity: 44.51; identified by sequence similarity; putative. (324 aa)    
Predicted Functional Partners:
AF_0090
Dehydrase; Similar to GB:X63449 PID:46810 percent identity: 34.15; identified by sequence similarity; putative.
 
  
 0.980
AF_0089
long-chain-fatty-acid--CoA ligase (fadD-1); Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096 percent identity: 31.91; identified by sequence similarity; putative.
 
  
 0.659
AF_1340
Citrate synthase (citZ); Similar to GB:U05257 SP:P39120 PID:487433 PID:2293267 GB:AL009126 percent identity: 50.27; identified by sequence similarity; putative.
  
  
 0.523
AF_1207
2-deoxy-D-gluconate 3-dehydrogenase (kduD); Similar to SP:Q05528 GB:X62073 PID:48986 percent identity: 45.31; identified by sequence similarity; putative.
 
 
 0.502
AF_2099
Muconate cycloisomerase II (clcB); Similar to GB:M16964 PID:141917 percent identity: 24.93; identified by sequence similarity; putative.
 
  
 0.450
AF_0088
Thiamine biosynthesis protein, putative; Similar to GB:L42023 SP:P44658 PID:1003600 PID:1222282 PID:1204606 percent identity: 28.17; identified by sequence similarity; putative.
  
  
 0.441
AF_0087
Nitrate ABC transporter, ATP-binding protein (nrtC-1); Similar to GB:L77117 SP:Q57855 PID:1591118 percent identity: 47.42; identified by sequence similarity; putative.
  
  
 0.417
lig
DNA ligase (lig); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
  
  
 0.417
AF_1725
DNA ligase, putative; Similar to SP:P54875 GB:AE000666 PID:1279773 percent identity: 32.69; identified by sequence similarity; putative.
  
  
 0.417
AF_2101
Alcohol dehydrogenase, zinc-dependent; Similar to GB:M96947 SP:Q06004 PID:304153 GB:AL009126 percent identity: 30.06; identified by sequence similarity; putative.
 
 
 0.415
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.