Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0144Cytochrome C oxidase, subunit II (cbaB); Similar to GB:L09121 PID:155085 SP:P98052 percent identity: 34.18; identified by sequence similarity; putative. (126 aa)    
Predicted Functional Partners:
AF_0142
Cytochrome C oxidase, subunit II, putative; Similar to GB:L09121 PID:155085 SP:P98052 percent identity: 38.04; identified by sequence similarity; putative.
 
 
 0.995
AF_0143
Conserved hypothetical protein; Similar to GB:L77117 PID:1592228 percent identity: 25.53; identified by sequence similarity; putative.
 
  
 0.974
AF_0190
Cytochrome C oxidase, subunit II, putative; Similar to GB:M94110 SP:Q04441 PID:142786 percent identity: 31.71; identified by sequence similarity; putative.
  
 
 0.973
ctaB
Cytochrome C oxidase folding protein (coxD); Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
     
  0.900
AF_0141
Predicted coding region AF_0141; Hypothetical protein; identified by GeneMark; putative.
     
 0.844
AF_0140
Ubiquinone/menaquinone biosynthesis methyltransferase (ubiE); Similar to GB:M87049 SP:P27851 PID:148231 GB:U00096 PID:2367307 percent identity: 31.00; identified by sequence similarity; putative.
       0.723
AF_1137
Predicted coding region AF_1137; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.695
AF_0139
Conserved hypothetical protein, C-terminus; Similar to GB:L77117 PID:1591888 percent identity: 28.10; identified by sequence similarity; putative.
       0.504
AF_0189
Predicted coding region AF_0189; Hypothetical protein; identified by GeneMark; putative.
      
 0.461
AF_2413
Coenzyme PQQ synthesis protein (pqqE); Similar to SP:P27507 PID:809708 percent identity: 30.47; identified by sequence similarity; putative.
 
  
 0.449
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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