Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
copBCopper-transporting ATPase, P-type (copB); Involved in copper export; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily. (690 aa)    
Predicted Functional Partners:
AF_0783
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57950 PID:1591233 percent identity: 42.71; identified by sequence similarity; putative.
      
 0.850
trpCD
Anthranilate synthase component II (trpD); Bifunctional enzyme that catalyzes the second and fourth steps of tryptophan biosynthetic pathway. The second step is catalyzed by the anthranilate phosphoribosyltransferase, coded by the TrpD domain and the fourth step is catalyzed by indole-3-glycerol phosphate synthase, coded by the TrpC domain (By similarity).
     
 0.625
AF_0151
Predicted coding region AF_0151; Hypothetical protein; identified by GeneMark; putative.
       0.572
AF_2388
Conserved hypothetical transmembrane protein; Similar to GB:L77117 SP:Q57891 PID:1591153 percent identity: 33.21; identified by sequence similarity; putative.
 
 
 0.423
AF_1774
Cationic amino acid transporter (cat-2); Similar to GB:L77117 SP:Q58026 PID:1591319 percent identity: 38.04; identified by sequence similarity; putative.
 
   
 0.420
AF_2137
Conserved hypothetical transmembrane protein; Similar to GB:L77117 SP:Q57891 PID:1591153 percent identity: 27.80; identified by sequence similarity; putative.
 
 
 0.412
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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