Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0196Medium-chain acyl-CoA ligase (alkK-1); Similar to SP:Q00594 PID:49084 percent identity: 34.58; identified by sequence similarity; putative. (540 aa)    
Predicted Functional Partners:
AF_0200
long-chain-fatty-acid--CoA ligase (fadD-2); Similar to GB:L42023 SP:P44446 PID:1004105 PID:1221904 PID:1204261 percent identity: 34.82; identified by sequence similarity; putative.
 
 
0.963
rpl6
LSU ribosomal protein L6P (rpl6P); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.644
AF_0198
Monoamine oxidase regulatory protein, putative; Similar to GP:1742267 percent identity: 41.67; identified by sequence similarity; putative.
  
  
 0.592
rpl3
LSU ribosomal protein L3P (rpl3P); One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.590
AF_0201
3-ketoacyl-CoA thiolase (acaB-5); Similar to GB:L77117 PID:1592180 percent identity: 26.91; identified by sequence similarity; putative.
  
  
 0.589
AF_0202
3-ketoacyl-CoA thiolase (acaB-6); Similar to GB:L77117 PID:1592180 percent identity: 33.51; identified by sequence similarity; putative.
  
  
 0.589
AF_0199
acyl-CoA dehydrogenase (acd-1); Similar to SP:P45867 PID:853760 GB:AL009126 percent identity: 35.92; identified by sequence similarity; putative.
  
  
 0.588
AF_0197
acetyl-CoA synthetase (acs-1); Similar to SP:P27550 PID:396404 PID:148105 GB:U00096 PID:1790505 percent identity: 27.14; identified by sequence similarity; putative.
  
  
 0.586
AF_0203
Conserved hypothetical protein; Similar to GB:L77117 PID:1592182 percent identity: 32.84; identified by sequence similarity; putative.
  
    0.548
rpl15
LSU ribosomal protein L15P (rpl15P); Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
   0.544
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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