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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0205Conserved hypothetical protein; Similar to GB:L77117 SP:Q57732 PID:1499066 percent identity: 45.73; identified by sequence similarity; putative. (204 aa)    
Predicted Functional Partners:
rpoL
DNA-directed RNA polymerase, subunit L (rpoL); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoL/eukaryotic RPB11/RPC19 RNA polymerase subunit family.
 
     0.867
csl4
Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable).
       0.847
AF_0204
Conserved hypothetical protein; Similar to GB:L77117 PID:1591773 percent identity: 45.53; identified by sequence similarity; putative.
       0.773
AF_1405
Conserved hypothetical protein; Similar to GB:L77117 PID:1592081 percent identity: 46.05; identified by sequence similarity; putative.
  
   
 0.660
pus10
Conserved hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
 
   
 0.652
AF_1432
Conserved hypothetical protein; Similar to SP:P38331 PID:536651 percent identity: 30.26; identified by sequence similarity; putative.
   
    0.626
AF_0203
Conserved hypothetical protein; Similar to GB:L77117 PID:1592182 percent identity: 32.84; identified by sequence similarity; putative.
       0.566
AF_0200
long-chain-fatty-acid--CoA ligase (fadD-2); Similar to GB:L42023 SP:P44446 PID:1004105 PID:1221904 PID:1204261 percent identity: 34.82; identified by sequence similarity; putative.
       0.559
rpl12
LSU ribosomal protein L12A (rpl12A); Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family.
       0.557
AF_0199
acyl-CoA dehydrogenase (acd-1); Similar to SP:P45867 PID:853760 GB:AL009126 percent identity: 35.92; identified by sequence similarity; putative.
       0.555
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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