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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0413Predicted coding region AF_0413; Hypothetical protein; identified by GeneMark; putative. (277 aa)    
Predicted Functional Partners:
AF_2330
Predicted coding region AF_2330; Hypothetical protein; identified by GeneMark; putative.
       0.564
cysS
cysteinyl-tRNA synthetase (cysS); Similar to GB:D26185 SP:Q06752 GB:L14580 GB:X73989 PID:289284 percent identity: 46.12; identified by sequence similarity; putative.
       0.466
AF_0412
Predicted coding region AF_0412; Hypothetical protein; identified by GeneMark; putative.
       0.466
AF_0360
Conserved hypothetical protein; Similar to GP:1707838 percent identity: 31.42; identified by sequence similarity; putative.
  
     0.418
AF_0409
Aspartate aminotransferase (aspB-4); Similar to PID:1001492 PID:1001578 percent identity: 45.24; identified by sequence similarity; putative.
 
     0.413
AF_0410
Signal-transducing histidine kinase, putative; Similar to PID:1652841 percent identity: 27.88; identified by sequence similarity; putative.
       0.413
AF_0983
Predicted coding region AF_0983; Hypothetical protein; identified by GeneMark; putative.
 
     0.411
AF_1494
Predicted coding region AF_1494; Hypothetical protein; identified by GeneMark; putative.
  
     0.409
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.