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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0540Predicted coding region AF_0540; Hypothetical protein; identified by GeneMark; putative. (228 aa)    
Predicted Functional Partners:
AF_0539
Conserved hypothetical protein; Similar to PID:662338 percent identity: 34.10; identified by sequence similarity; putative.
   
   0.793
AF_0541
Predicted coding region AF_0541; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_0616
Conserved hypothetical protein; Similar to PID:1652163 percent identity: 28.15; identified by sequence similarity; putative.
  
  
 0.475
AF_2430
lacZ expression regulatory protein (icc); Similar to GB:D16557 SP:P36650 PID:453396 PID:882562 GB:U00096 percent identity: 29.55; identified by sequence similarity; putative.
  
 
 0.461
AF_0041
Polysaccharide ABC transporter, ATP-binding protein (rfbB-1); Similar to GP:1235661 percent identity: 42.49; identified by sequence similarity; putative.
  
  
 0.419
AF_0290
Polysaccharide ABC transporter, ATP-binding protein (rfbB-2); Similar to PID:1653127 percent identity: 43.93; identified by sequence similarity; putative.
  
  
 0.419
AF_0242
Glucose-1-phosphate thymidylyltransferase (graD-1); Similar to PID:763512 percent identity: 27.69; identified by sequence similarity; putative.
  
 
 0.401
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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