Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0602LPS biosynthesis protein, putative; Similar to GB:L77117 PID:1500505 percent identity: 29.63; identified by sequence similarity; putative. (396 aa)    
Predicted Functional Partners:
AF_0601
Predicted coding region AF_0601; Hypothetical protein; identified by GeneMark; putative.
 
   
 0.650
AF_0325
Glucose-1-phosphate thymidylyltransferase (graD-2); Similar to PID:763512 percent identity: 43.11; identified by sequence similarity; putative.
 
  
 0.600
AF_0595
Polysaccharide biosynthesis protein, putative; Similar to GB:L77117 PID:1591720 percent identity: 24.05; identified by sequence similarity; putative.
 
  
 0.597
AF_0599
Dolichol phosphate mannose synthase, putative; Similar to PID:1653697 percent identity: 32.10; identified by sequence similarity; putative.
  
  
 0.554
AF_0324
dTDP-glucose 4,6-dehydratase (rfbB); Similar to PID:567874 percent identity: 50.00; identified by sequence similarity; putative.
  
  
 0.531
AF_0600
Predicted coding region AF_0600; Hypothetical protein; identified by GeneMark; putative.
       0.463
AF_0603
Predicted coding region AF_0603; Hypothetical protein; identified by GeneMark; putative.
       0.456
AF_0604
Predicted coding region AF_0604; Hypothetical protein; identified by GeneMark; putative.
       0.456
AF_0606
First mannosyl transferase (wbaZ-2); Similar to GB:X61917 PID:47012 percent identity: 29.04; identified by sequence similarity; putative.
 
     0.424
AF_0675
2-hydroxy-6-oxohepta-2,4-dienoate hydrolase (todF); Similar to GB:M64080 SP:P23133 GB:U18304 PID:151222 percent identity: 26.35; identified by sequence similarity; putative.
   
 
 0.418
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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