STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0639Nitrate ABC transporter, permease protein (nrtB-2); Similar to GB:L77117 SP:Q57856 PID:1591119 percent identity: 37.45; identified by sequence similarity; putative. (248 aa)    
Predicted Functional Partners:
AF_0638
Nitrate ABC transporter, ATP-binding protein (nrtC-2); Similar to GB:L77117 SP:Q57855 PID:1591118 percent identity: 55.51; identified by sequence similarity; putative.
  
 0.986
AF_0640
Nitrate ABC transporter, ATP-binding protein, putative; Similar to PID:1652569 percent identity: 32.54; identified by sequence similarity; putative.
 
  
 0.976
AF_0087
Nitrate ABC transporter, ATP-binding protein (nrtC-1); Similar to GB:L77117 SP:Q57855 PID:1591118 percent identity: 47.42; identified by sequence similarity; putative.
  
 0.939
AF_0088
Thiamine biosynthesis protein, putative; Similar to GB:L42023 SP:P44658 PID:1003600 PID:1222282 PID:1204606 percent identity: 28.17; identified by sequence similarity; putative.
 
  
 0.886
AF_0637
Predicted coding region AF_0637; Hypothetical protein; identified by GeneMark; putative.
       0.774
AF_0635
Immunogenic protein (bcsp31-2); Similar to SP:P12920 PID:144105 percent identity: 44.33; identified by sequence similarity; putative.
       0.773
AF_0636
Conserved hypothetical protein; Similar to GB:L42023 SP:P44483 PID:1004200 PID:1221956 PID:1204308 percent identity: 28.75; identified by sequence similarity; putative.
       0.773
AF_0641
ISA1214-3, ISORF2; Similar to GB:L77117 SP:Q57808 PID:1499149 percent identity: 26.53; identified by sequence similarity; putative.
       0.773
AF_0642
ISA1214-3, putative transposase; Similar to percent identity: 33.33; identified by sequence similarity; putative.
       0.560
mer
N5,N10-methylenetetrahydromethanopterin reductase (mer-1); Catalyzes the oxidation of methyl-H(4)MPT to methylene- H(4)MPT; Belongs to the mer family.
  
  
 0.484
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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