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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0646Agmatinase (speB); Similar to GB:M32363 SP:P16936 PID:147859 PID:551839 PID:882466 percent identity: 33.33; identified by sequence similarity; putative; Belongs to the arginase family. (275 aa)    
Predicted Functional Partners:
speE
Spermidine synthase (speE); Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
 
 
 0.981
eif5a
Translation initiation factor eIF-5A (eif5A); Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family.
  
  
 0.923
pdaD1
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57764 PID:1591036 percent identity: 38.26; identified by sequence similarity; putative; Belongs to the PdaD family.
    
 0.922
pdaD2
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57764 PID:1591036 percent identity: 32.67; identified by sequence similarity; putative; Belongs to the PdaD family.
    
 0.922
AF_0921
Predicted coding region AF_0921; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.824
leuS
leucyl-tRNA synthetase (leuS); Similar to GB:L77117 SP:Q58050 PID:1591345 percent identity: 49.68; identified by sequence similarity; putative; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
   0.708
lysA
Diaminopimelate decarboxylase (lysA); Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.694
argD
Acetylornithine aminotransferase (argD-1); Similar to GB:L77117 SP:Q58131 PID:1591438 percent identity: 48.28; identified by sequence similarity; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.654
AF_1815
Acetylornithine aminotransferase (argD-2); Similar to GB:L77117 SP:Q58131 PID:1591438 percent identity: 36.19; identified by sequence similarity; putative.
  
 
 0.654
AF_0922
Predicted coding region AF_0922; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.643
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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