Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_0678ISA1083-1, ISORF2; Similar to percent identity: 33.62; identified by sequence similarity; putative. (160 aa)    
Predicted Functional Partners:
AF_0679
ISA1083-1, putative transposase; Similar to GP:1815610 percent identity: 37.18; identified by sequence similarity; putative.
   
 0.957
AF_1352
ISA1083-2, putative transposase; Similar to percent identity: 31.54; identified by sequence similarity; putative.
   
 0.868
AF_2139
ISA1083-3, putative transposase; Similar to percent identity: 31.54; identified by sequence similarity; putative.
   
 0.868
AF_0677
acetyl-CoA synthetase (acs-3); Similar to PID:1001216 PID:1001254 percent identity: 40.86; identified by sequence similarity; putative.
       0.515
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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