Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trkATRK potassium uptake system protein (trkA-2); Part of a potassium transport system. (436 aa)    
Predicted Functional Partners:
AF_0839
TRK potassium uptake system protein (trkH); Similar to GB:U00096 PID:2367317 percent identity: 38.69; identified by sequence similarity; putative.
 
   
 0.980
ribH
Riboflavin synthase, subunit beta (ribE); Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.
  
  
 0.890
pelA
Cell division protein pelota (pelA); May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity.
       0.682
AF_0836
Predicted coding region AF_0836; Hypothetical protein; identified by GeneMark; putative.
       0.519
AF_0840
long-chain-fatty-acid--CoA ligase (fadD-4); Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096 percent identity: 38.12; identified by sequence similarity; putative.
     
 0.502
AF_0218
TRK potassium uptake system protein (trkA-1); Similar to GB:X74307 SP:P39449 PID:414170 percent identity: 30.17; identified by sequence similarity; putative.
     
 0.479
AF_1546
Conserved hypothetical protein; Similar to SP:P11666 PID:41424 PID:882453 GB:U00096 PID:1789291 percent identity: 33.47; identified by sequence similarity; putative.
     
 0.469
AF_0834
Ferritin, putative; Similar to GB:L42023 SP:P43707 PID:1007431 PID:1221522 PID:1205619 percent identity: 39.75; identified by sequence similarity; putative.
  
    0.458
AF_0265
Molybdenum cofactor biosynthesis protein (moaB); Similar to GB:L77117 PID:1592270 percent identity: 44.44; identified by sequence similarity; putative.
     
 0.419
AF_0833
Desulfoferrodoxin (dfx); Similar to GB:M81168 SP:P20418 GB:M28848 PID:145115 PID:758676 percent identity: 63.03; identified by sequence similarity; putative; Belongs to the desulfoferrodoxin family.
       0.417
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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