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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0904Succinyl-diaminopimelate desuccinylase (dapE-2); Similar to GB:L77117 SP:Q57899 PID:1591159 percent identity: 43.77; identified by sequence similarity; putative. (403 aa)    
Predicted Functional Partners:
argD
Acetylornithine aminotransferase (argD-1); Similar to GB:L77117 SP:Q58131 PID:1591438 percent identity: 48.28; identified by sequence similarity; putative; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.925
dapF
Diaminopimelate epimerase (dapF); Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.
    
 0.924
AF_0051
Succinyl-diaminopimelate desuccinylase (dapE-1); Similar to GB:L77117 SP:Q57899 PID:1591159 percent identity: 30.52; identified by sequence similarity; putative.
 
  
 
0.921
AF_0409
Aspartate aminotransferase (aspB-4); Similar to PID:1001492 PID:1001578 percent identity: 45.24; identified by sequence similarity; putative.
    
 0.917
AF_0903
Predicted coding region AF_0903; Hypothetical protein; identified by GeneMark; putative.
       0.786
AF_0901
Conserved hypothetical protein; Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA/RNA precursor pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions.
 
     0.769
AF_0902
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58096 PID:1591398 percent identity: 33.62; identified by sequence similarity; putative.
       0.723
AF_0899
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58527 PID:1499979 percent identity: 45.15; identified by sequence similarity; putative.
 
     0.703
endA
tRNA intron endonuclease (endA); Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp.
       0.656
argC
N-acetyl-gamma-glutamyl-phosphate reductase (argC); Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
 
 0.586
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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