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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_0905Conserved hypothetical protein; Similar to GB:L77117 PID:1592338 percent identity: 32.77; identified by sequence similarity; putative. (124 aa)    
Predicted Functional Partners:
AF_0906
Hydantoin utilization protein A (hyuA); Similar to PID:1591628 GB:L77117 PID:1591628 percent identity: 27.41; identified by sequence similarity; putative.
       0.773
rsmA
Dimethyladenosine transferase (ksgA); Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
  
  
 0.704
AF_0907
Conserved hypothetical protein; Similar to GB:D26185 SP:P37489 PID:467342 GB:AL009126 percent identity: 27.30; identified by sequence similarity; putative.
       0.685
AF_2072
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58035 PID:1591329 percent identity: 41.03; identified by sequence similarity; putative; Belongs to the UPF0235 family.
       0.564
dnaG
Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
     
 0.512
AF_0908
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57756 PID:1499092 percent identity: 30.00; identified by sequence similarity; putative.
       0.490
gltX
glutamyl-tRNA synthetase (gltX); Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
  
  
 0.462
AF_1877
Conserved hypothetical protein; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family.
     
 0.451
AF_0058
Conserved hypothetical protein; Similar to GB:L77117 PID:1592059 percent identity: 36.08; identified by sequence similarity; putative; Belongs to the UPF0113 family.
      
 0.426
AF_0071
ATP-dependent RNA helicase, putative; Similar to GB:L77117 SP:Q57828 PID:1591089 percent identity: 29.59; identified by sequence similarity; putative.
      
 0.420
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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