STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1012Conserved hypothetical protein; Similar to GB:L77117 SP:Q57970 PID:1591255 percent identity: 38.49; identified by sequence similarity; putative. (312 aa)    
Predicted Functional Partners:
AF_0587
Conserved hypothetical protein; Similar to GB:L77117 PID:1499864 percent identity: 31.13; identified by sequence similarity; putative.
 
     0.786
AF_1011
Conserved hypothetical protein; Similar to SP:P53259 PID:1323155 percent identity: 35.92; identified by sequence similarity; putative.
       0.773
AF_1010
Ferredoxin (fdx-6); Similar to SP:P00211 percent identity: 44.44; identified by sequence similarity; putative.
       0.757
rpl44e
LSU ribosomal protein L44E (rpl44E); Binds to the 23S rRNA.
  
     0.685
rpl40e
LSU ribosomal protein L40E (rpl40E); Similar to GB:L77117 SP:P54058 PID:1591423 percent identity: 73.33; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.657
AF_1009
Predicted coding region AF_1009; Hypothetical protein; identified by GeneMark; putative.
       0.637
AF_0525
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58607 PID:1591839 percent identity: 46.86; identified by sequence similarity; putative.
  
     0.632
AF_1972
Conserved hypothetical protein; Similar to GB:L77117 PID:1500551 percent identity: 30.07; identified by sequence similarity; putative.
  
     0.629
AF_0364
ATP-dependent protease La (lon); ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Degrades polypeptides processively (By similarity).
  
     0.626
AF_0281
Predicted coding region AF_0281; Hypothetical protein; identified by GeneMark; putative.
  
     0.624
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.