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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1046Predicted coding region AF_1046; Hypothetical protein; identified by GeneMark; putative. (223 aa)    
Predicted Functional Partners:
leuS
leucyl-tRNA synthetase (leuS); Similar to GB:L77117 SP:Q58050 PID:1591345 percent identity: 49.68; identified by sequence similarity; putative; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.779
AF_1047
Predicted coding region AF_1047; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_1049
Type II secretion system protein (gspE-4); Similar to GB:L77117 SP:Q58310 PID:1591575 percent identity: 46.48; identified by sequence similarity; putative.
  
    0.773
AF_1045
Methyl-accepting chemotaxis protein (tlpC-2); Similar to GB:Z34005 SP:P39209 GB:D30762 PID:496484 PID:710635 percent identity: 29.58; identified by sequence similarity; putative.
  
 
 0.755
AF_1048
Conserved hypothetical protein; Similar to GB:L77117 PID:1591576 percent identity: 28.23; identified by sequence similarity; putative.
       0.752
cheB
Protein-glutamate methylesterase (cheB); Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
     
 0.711
AF_1037
Chemotaxis protein methyltransferase (cheR); Similar to PID:1177141 percent identity: 33.21; identified by sequence similarity; putative.
       0.680
map
Methionyl aminopeptidase (map); Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val); Belongs to the peptidase M24A family. Methionine aminopeptidase archaeal type 2 subfamily.
   
   0.664
AF_1044
Purine-binding chemotaxis protein (cheW); Similar to GB:M26411 SP:P21821 PID:148348 percent identity: 40.41; identified by sequence similarity; putative.
     
 0.652
AF_1042
Chemotaxis response regulator (cheY); Similar to PID:940149 percent identity: 62.93; identified by sequence similarity; putative.
     
 0.604
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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