Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AF_1109Predicted coding region AF_1109; Hypothetical protein; identified by GeneMark; putative. (113 aa)    
Predicted Functional Partners:
AF_1110
Predicted coding region AF_1110; Hypothetical protein; identified by GeneMark; putative.
       0.788
dut
Deoxycytidine triphosphate deaminase, putative; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.759
trm1
N2,N2-dimethylguanosine tRNA methyltransferase (trm1); Dimethylates a single guanine residue at position 26 of a number of tRNAs using S-adenosyl-L-methionine as donor of the methyl groups; Belongs to the class I-like SAM-binding methyltransferase superfamily. Trm1 family.
       0.624
AF_1777
Conserved hypothetical protein; Similar to GB:L42023 PID:1003114 PID:1222018 PID:1204364 SP:Q57354 percent identity: 34.16; identified by sequence similarity; putative.
       0.612
AF_1107
Conserved hypothetical protein; Similar to PID:1652585 percent identity: 43.41; identified by sequence similarity; putative.
       0.608
AF_1111
Predicted coding region AF_1111; Hypothetical protein; identified by GeneMark; putative.
       0.554
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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