Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_1135Predicted coding region AF_1135; Hypothetical protein; identified by GeneMark; putative. (211 aa)    
Predicted Functional Partners:
AF_1134
Predicted coding region AF_1134; Hypothetical protein; identified by GeneMark; putative.
       0.526
AF_1136
ABC transporter, ATP-binding protein; Similar to GB:L20573 SP:P42332 PID:437315 percent identity: 39.32; identified by sequence similarity; putative.
       0.520
AF_1137
Predicted coding region AF_1137; Hypothetical protein; identified by GeneMark; putative.
       0.520
AF_1138
Predicted coding region AF_1138; Hypothetical protein; identified by GeneMark; putative.
       0.520
AF_1139
ABC transporter, ATP-binding protein; Similar to PID:1177253 SP:P55339 PID:2226115 GB:AL009126 percent identity: 38.18; identified by sequence similarity; putative.
       0.428
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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