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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1155Conserved hypothetical protein; Similar to GB:L77117 SP:Q60344 PID:1498797 percent identity: 37.05; identified by sequence similarity; putative. (222 aa)    
Predicted Functional Partners:
AF_1149
Large helicase-related protein (lhr-1); Similar to GB:L77117 SP:Q57742 PID:1591016 percent identity: 34.46; identified by sequence similarity; putative.
 
    0.765
AF_1156
Predicted coding region AF_1156; Hypothetical protein; identified by GeneMark; putative.
       0.588
AF_1153
Iron-sulfur cluster binding protein; Similar to PID:1652823 percent identity: 27.94; identified by sequence similarity; putative.
  
    0.581
AF_2361
mRNA 3'-end processing factor, putative; Similar to GP:1707412 percent identity: 30.49; identified by sequence similarity; putative.
 
     0.556
AF_1154
Predicted coding region AF_1154; Hypothetical protein; identified by GeneMark; putative.
       0.553
AF_0577
Conserved hypothetical protein; Similar to GB:L77117 PID:1592229 percent identity: 30.20; identified by sequence similarity; putative.
       0.534
lig
DNA ligase (lig); DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
   
 0.493
AF_1531
Conserved hypothetical protein; Similar to GB:L77117 SP:Q60345 PID:1498798 percent identity: 43.68; identified by sequence similarity; putative.
  
     0.472
dnaG
Conserved hypothetical protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
 
     0.452
AF_1725
DNA ligase, putative; Similar to SP:P54875 GB:AE000666 PID:1279773 percent identity: 32.69; identified by sequence similarity; putative.
 
   
 0.446
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.