STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1171Predicted coding region AF_1171; Hypothetical protein; identified by GeneMark; putative. (217 aa)    
Predicted Functional Partners:
AF_1170
Ribose ABC transporter, ATP-binding protein (rbsA-2); Similar to GP:1894759 percent identity: 27.94; identified by sequence similarity; putative.
  
 0.995
AF_1169
Conserved hypothetical protein; Similar to GP:1674297 percent identity: 28.16; identified by sequence similarity; putative.
  
 0.991
cbiM
Cobalamin biosynthesis protein (cbiM-1); Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.
  
 
 0.909
AF_0731
Cobalt transport ATP-binding protein (cbiO-1); Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
  
 
 0.909
AF_1841
Cobalt transport ATP-binding protein (cbiO-2); Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system (By similarity).
  
 
 0.909
AF_1843
Cobalamin biosynthesis protein (cbiM-2); May be involved in nickel transport; Belongs to the CbiM family. NikM subfamily.
  
 
 0.909
cbiHC
Cobalamin biosynthesis precorrin-3 methylase (cbiH); Bifunctional enzyme with a methyltransferase domain that catalyzes the ring contraction and methylation of C-17 in cobalt-factor III to form cobalt-factor IV, and an isomerase domain that catalyzes the conversion of cobalt-precorrin-8 to cobyrinate; In the C-terminal section; belongs to the CobH family.
  
  
 0.869
cbiN
Cobalt transport protein (cbiN); Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.
  
  
 0.699
truA
Pseudouridylate synthase I (truA) #; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
  
 0.643
atpD
H+-transporting ATP synthase, subunit D (atpD); Produces ATP from ADP in the presence of a proton gradient across the membrane.
       0.620
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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