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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1200Conserved hypothetical protein; Similar to GP:1654018 percent identity: 61.01; identified by sequence similarity; putative. (278 aa)    
Predicted Functional Partners:
AF_1210
Conserved hypothetical protein; Similar to GP:1654020 percent identity: 34.56; identified by sequence similarity; putative.
 
    0.855
AF_1199
Glutaconate CoA-transferase, subunit A (gctA); Similar to PID:559392 percent identity: 31.86; identified by sequence similarity; putative; Belongs to the 3-oxoacid CoA-transferase subunit A family.
  
    0.845
AF_1201
Predicted coding region AF_1201; Hypothetical protein; identified by GeneMark; putative.
       0.542
AF_1207
2-deoxy-D-gluconate 3-dehydrogenase (kduD); Similar to SP:Q05528 GB:X62073 PID:48986 percent identity: 45.31; identified by sequence similarity; putative.
 
  
 0.517
AF_1466
Conserved hypothetical protein; Similar to GP:2245326 percent identity: 30.61; identified by sequence similarity; putative.
  
     0.508
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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