STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiXPhenylacrylic acid decarboxylase (pad1); Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (182 aa)    
Predicted Functional Partners:
AF_0209
Conserved hypothetical protein; Similar to SP:P26615 GB:M87049 GB:X65013 PID:148243 percent identity: 42.53; identified by sequence similarity; putative; Belongs to the UbiD family.
 
 0.991
AF_2176
4-hydroxybenzoate octaprenyltransferase (ubiA); Similar to GP:1813467 percent identity: 41.61; identified by sequence similarity; putative.
    
 0.922
AF_1643
Conserved hypothetical protein; Similar to GB:L77117 PID:1499986 percent identity: 43.00; identified by sequence similarity; putative; Belongs to the UbiD family.
 
  
 0.913
cetZ
Cell division protein, putative; Involved in cell shape control; Belongs to the CetZ family.
       0.789
AF_0861
D-arabino 3-hexulose 6-phosphate formaldehyde lyase (hps-1); Similar to GB:L77117 SP:Q58842 PID:1592092 percent identity: 30.59; identified by sequence similarity; putative.
     
 0.663
trpCD
Anthranilate synthase component II (trpD); Bifunctional enzyme that catalyzes the second and fourth steps of tryptophan biosynthetic pathway. The second step is catalyzed by the anthranilate phosphoribosyltransferase, coded by the TrpD domain and the fourth step is catalyzed by indole-3-glycerol phosphate synthase, coded by the TrpC domain (By similarity).
       0.631
lysS
lysyl-tRNA synthetase (lysS); Similar to GB:L77117 SP:Q57959 PID:1591243 percent identity: 43.60; identified by sequence similarity; putative; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.544
AF_1217
Conserved hypothetical protein; Similar to GB:L77117 SP:Q60332 PID:1498780 percent identity: 39.94; identified by sequence similarity; putative.
       0.544
prf1
Peptide chain release factor eRF, subunit 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
       0.543
uppS
Conserved hypothetical protein; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with geranylgeranyl diphosphate (GGPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30E,34E,38E)-undecaprenyl diphosphate (tritrans,heptacis-UPP). It is probably the precursor of glycosyl carrier lipids.
     
 0.541
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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