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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1231Predicted coding region AF_1231; Hypothetical protein; identified by GeneMark; putative. (469 aa)    
Predicted Functional Partners:
AF_1230
Predicted coding region AF_1230; Hypothetical protein; identified by GeneMark; putative.
      0.983
AF_1229
Conserved hypothetical protein; Similar to GB:L77117 PID:1592186 percent identity: 29.97; identified by sequence similarity; putative.
  
    0.828
AF_1225
Predicted coding region AF_1225; Hypothetical protein; identified by GeneMark; putative.
       0.595
AF_1226
Predicted coding region AF_1226; Hypothetical protein; identified by GeneMark; putative.
       0.595
AF_1227
Predicted coding region AF_1227; Hypothetical protein; identified by GeneMark; putative.
       0.595
AF_1228
Predicted coding region AF_1228; Hypothetical protein; identified by GeneMark; putative.
       0.595
AF_1232
Conserved hypothetical protein; Similar to GP:1707681 percent identity: 30.90; identified by sequence similarity; putative.
       0.563
AF_1234
Mutator protein MutT (mutT); Similar to GB:L77117 PID:1500003 percent identity: 63.64; identified by sequence similarity; putative.
       0.559
AF_1233
Conserved hypothetical protein; Similar to GP:1787271 percent identity: 28.95; identified by sequence similarity; putative.
       0.557
tfs
Transcription-associated protein TFIIS; Induces RNA cleavage activity in the RNA polymerase. In its presence, the cleavage activity of the RNA polymerase truncates the RNA back to position +15 in a stepwise manner by releasing mainly dinucleotides from the 3'-end of the nascent RNA. The truncated RNAs are able to continue elongation. Involved in transcriptional proofreading and fidelity. Misincorporation of nucleotides during elongation of transcription leads to arrested elongation complexes which are rescued by TFS-promoted removal of a dinucleotide from the 3'-end. TFS is able to ind [...]
       0.557
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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