Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_1302Conserved hypothetical protein; Similar to GP:1786320 percent identity: 23.12; identified by sequence similarity; putative. (188 aa)    
Predicted Functional Partners:
AF_1300
ABC transporter, ATP-binding protein; Similar to PID:1163122 percent identity: 34.13; identified by sequence similarity; putative.
 
  
 0.846
AF_1301
Predicted coding region AF_1301; Hypothetical protein; identified by GeneMark; putative.
       0.628
AF_1303
Predicted coding region AF_1303; Hypothetical protein; identified by GeneMark; putative.
       0.610
AF_0131
NAD(P)H-flavin oxidoreductase, putative; Similar to GB:L42023 PID:1007227 PID:1221408 PID:1205518 SP:Q57431 percent identity: 28.16; identified by sequence similarity; putative.
  
  
 0.567
AF_0226
NADH oxidase (noxC); Similar to GB:X60110 GB:S55441 PID:48247 PID:265804 percent identity: 38.36; identified by sequence similarity; putative.
  
  
 0.567
AF_2267
NAD(P)H-flavin oxidoreductase; Similar to GB:L42023 PID:1007227 PID:1221408 PID:1205518 SP:Q57431 percent identity: 31.37; identified by sequence similarity; putative.
  
  
 0.567
AF_0393
ABC transporter, ATP-binding protein; Similar to PID:1001492 PID:1001505 percent identity: 34.55; identified by sequence similarity; putative.
 
  
 0.527
AF_1139
ABC transporter, ATP-binding protein; Similar to PID:1177253 SP:P55339 PID:2226115 GB:AL009126 percent identity: 38.18; identified by sequence similarity; putative.
 
  
 0.519
tfb
Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB).
       0.452
AF_0984
ABC transporter, ATP-binding protein; Similar to SP:P46903 PID:973330 PID:2415726 GB:AL009126 percent identity: 35.16; identified by sequence similarity; putative.
  
  
 0.438
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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