STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1388DNA helicase, putative; Similar to GB:L77117 SP:Q57568 PID:1590880 percent identity: 46.83; identified by sequence similarity; putative. (648 aa)    
Predicted Functional Partners:
AF_2350
ATP-dependent RNA helicase HepA, putative; Similar to SP:P54509 PID:1303889 GB:AL009126 percent identity: 31.49; identified by sequence similarity; putative.
   
 
 0.774
AF_0865
Carboxylesterase (est-1); Similar to GB:D14529 PID:402521 percent identity: 27.06; identified by sequence similarity; putative.
   
 0.753
AF_1537
Carboxylesterase (est-2); Similar to GB:D14529 PID:402521 percent identity: 29.02; identified by sequence similarity; putative.
   
 0.753
AF_1706
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid hydrolase (pcbD); Similar to GP:1395174 percent identity: 29.41; identified by sequence similarity; putative.
   
 0.753
AF_1763
Lipase, putative; Similar to GB:M74010 SP:P37957 PID:143154 PID:2415721 GB:AL009126 percent identity: 33.54; identified by sequence similarity; putative.
   
 0.753
AF_2336
Carboxylesterase (est-3); Similar to GB:D14529 PID:402521 percent identity: 28.84; identified by sequence similarity; putative.
   
 0.753
AF_0532
mRNA 3'-end processing factor, putative; Similar to GB:L77117 SP:Q60355 PID:1590845 percent identity: 39.36; identified by sequence similarity; putative.
   
 
 0.746
AF_2361
mRNA 3'-end processing factor, putative; Similar to GP:1707412 percent identity: 30.49; identified by sequence similarity; putative.
   
 
 0.746
AF_0539
Conserved hypothetical protein; Similar to PID:662338 percent identity: 34.10; identified by sequence similarity; putative.
   
 0.745
AF_1181
GTP-binding protein; Similar to GP:1732241 percent identity: 36.26; identified by sequence similarity; putative.
   
 0.745
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.