Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AF_1391Branched-chain amino acid ABC transporter, periplasmic binding protein (braC-4); Similar to GB:L77117 PID:1591901 percent identity: 50.12; identified by sequence similarity; putative. (425 aa)    
Predicted Functional Partners:
livG
Branched-chain amino acid ABC transporter, ATP-binding protein (braF-4) {Methanococcus jannasch; Probable component of a branched-chain amino-acid transport system.
 
  
 0.977
AF_1392
Branched-chain amino acid ABC transporter, permease protein (braD-4); Similar to GB:L77117 PID:1591904 percent identity: 65.44; identified by sequence similarity; putative.
 
  
 0.966
livF
Branched-chain amino acid ABC transporter, ATP-binding protein (braG-4) {Methanococcus jannasch; Probable component of a branched-chain amino-acid transport system.
 
  
 0.960
AF_0827
Branched-chain amino acid ABC transporter, periplasmic binding protein (braC-2); Similar to GB:D90223 SP:P21175 GB:M31071 PID:151110 PID:216863 percent identity: 26.83; identified by sequence similarity; putative.
  
  
  0.951
AF_1393
Branched-chain amino acid ABC transporter, permease protein (braE-4); Similar to GB:L77117 PID:1591905 percent identity: 60.53; identified by sequence similarity; putative.
 
  
 0.948
AF_0962
Branched-chain amino acid ABC transporter, periplasmic binding protein (braC-3); Similar to GB:D90223 SP:P21175 GB:M31071 PID:151110 PID:216863 percent identity: 25.58; identified by sequence similarity; putative.
  
  
  0.931
AF_0223
Branched-chain amino acid ABC transporter, periplasmic binding protein (braC-1); Similar to GB:L77117 PID:1591901 percent identity: 26.94; identified by sequence similarity; putative.
  
  
  0.921
AF_0824
Branched-chain amino acid ABC transporter, permease protein (braE-2); Similar to SP:P22729 GB:U00039 PID:466592 GB:U00096 PID:1789865 percent identity: 31.33; identified by sequence similarity; putative.
 
  
 0.835
AF_0825
Branched-chain amino acid ABC transporter, permease protein (braD-2); Similar to SP:P08340 GB:U00039 PID:146633 PID:466593 GB:U00096 percent identity: 31.16; identified by sequence similarity; putative.
 
  
 0.827
AF_0224
Branched-chain amino acid ABC transporter, permease protein (braD-1); Similar to SP:P08340 GB:U00039 PID:146633 PID:466593 GB:U00096 percent identity: 25.71; identified by sequence similarity; putative.
 
  
 0.804
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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