Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_1399Conserved hypothetical protein; Similar to SP:P42110 SP:P42111 PID:563945 PID:904175 PID:904190 percent identity: 34.01; identified by sequence similarity; putative. (613 aa)    
Predicted Functional Partners:
AF_1398
Predicted coding region AF_1398; Hypothetical protein; identified by GeneMark; putative.
       0.775
AF_1401
Iron (III) ABC transporter, ATP-binding protein (hemV-3); Similar to GB:L77117 PID:1591556 percent identity: 35.19; identified by sequence similarity; putative.
  
    0.581
AF_1400
Conserved hypothetical protein; Similar to GB:L77117 PID:1500511 percent identity: 32.53; identified by sequence similarity; putative.
       0.580
hisS
histidyl-tRNA synthetase (hisS); Similar to GB:L77117 SP:Q58406 PID:1591660 percent identity: 45.97; identified by sequence similarity; putative; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.554
AF_1402
Iron (III) ABC transporter, permease protein (hemU-2); Similar to GB:L42023 PID:1007599 PID:1221614 PID:1205706 SP:Q57130 percent identity: 35.22; identified by sequence similarity; putative.
       0.552
AF_1404
Transcriptional regulatory protein, AsnC family; Similar to GB:L10328 SP:P03809 GB:K00826 PID:290592 PID:455179 percent identity: 45.10; identified by sequence similarity; putative.
  
    0.532
AF_0053
Conserved hypothetical protein; Similar to PID:1001613 percent identity: 41.63; identified by sequence similarity; putative.
 
    0.516
AF_1403
Conserved hypothetical protein; Similar to GB:L77117 PID:1592100 percent identity: 58.99; identified by sequence similarity; putative.
       0.515
rpl13
LSU ribosomal protein L13P (rpl13P); This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
    0.475
AF_1420
Membrane protein; Similar to GB:L77117 SP:Q58237 PID:1591514 percent identity: 51.83; identified by sequence similarity; putative.
 
   0.470
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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