Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_1409Modification methylase, type III R/M system; Similar to SP:P14827 GB:X17111 PID:41315 percent identity: 31.36; identified by sequence similarity; putative. (969 aa)    
Predicted Functional Partners:
AF_1406
Predicted coding region AF_1406; Hypothetical protein; identified by GeneMark; putative.
 
     0.857
AF_1407
Predicted coding region AF_1407; Hypothetical protein; identified by GeneMark; putative.
       0.737
AF_1408
Predicted coding region AF_1408; Hypothetical protein; identified by GeneMark; putative.
       0.737
AF_1410
ISA0963-5, putative transposase; Similar to GP:1143021 percent identity: 33.52; identified by sequence similarity; putative.
 
     0.650
AF_2350
ATP-dependent RNA helicase HepA, putative; Similar to SP:P54509 PID:1303889 GB:AL009126 percent identity: 31.49; identified by sequence similarity; putative.
 
   
 0.496
AF_1401
Iron (III) ABC transporter, ATP-binding protein (hemV-3); Similar to GB:L77117 PID:1591556 percent identity: 35.19; identified by sequence similarity; putative.
 
     0.471
AF_1405
Conserved hypothetical protein; Similar to GB:L77117 PID:1592081 percent identity: 46.05; identified by sequence similarity; putative.
       0.454
AF_1708
Type I restriction-modification enzyme, R subunit; Similar to GB:L77117 SP:Q57588 PID:1592264 percent identity: 38.95; identified by sequence similarity; putative.
 
   
 0.434
AF_1403
Conserved hypothetical protein; Similar to GB:L77117 PID:1592100 percent identity: 58.99; identified by sequence similarity; putative.
       0.408
AF_1404
Transcriptional regulatory protein, AsnC family; Similar to GB:L10328 SP:P03809 GB:K00826 PID:290592 PID:455179 percent identity: 45.10; identified by sequence similarity; putative.
       0.408
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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