| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AF_1805 | csl4 | AF_1805 | AF_0206 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | 0.963 |
| AF_1805 | nep1 | AF_1805 | AF_0734 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | Conserved hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.980 |
| AF_1805 | rps11 | AF_1805 | AF_2283 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | SSU ribosomal protein S11P (rps11P); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.963 |
| AF_1805 | rps4 | AF_1805 | AF_2284 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | SSU ribosomal protein S4P (rps4P); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.977 |
| AF_1805 | rps6e | AF_1805 | AF_0511 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | SSU ribosomal protein S6E (rps6E); Similar to GB:L77117 SP:P54067 PID:1591894 percent identity: 50.83; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.978 |
| AF_1805 | rrp4 | AF_1805 | AF_0492 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (Probable); Belongs to the RRP4 family. | 0.951 |
| AF_1805 | rrp42 | AF_1805 | AF_0494 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.954 |
| AF_1805 | rtcA | AF_1805 | AF_1435 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | Conserved hypothetical protein; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.929 |
| AF_1805 | tmcA | AF_1805 | AF_1522 | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | Conserved hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.925 |
| csl4 | AF_1805 | AF_0206 | AF_1805 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | 0.963 |
| csl4 | nep1 | AF_0206 | AF_0734 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | Conserved hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | 0.962 |
| csl4 | rps11 | AF_0206 | AF_2283 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | SSU ribosomal protein S11P (rps11P); Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. | 0.932 |
| csl4 | rps4 | AF_0206 | AF_2284 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | SSU ribosomal protein S4P (rps4P); One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.949 |
| csl4 | rps6e | AF_0206 | AF_0511 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | SSU ribosomal protein S6E (rps6E); Similar to GB:L77117 SP:P54067 PID:1591894 percent identity: 50.83; identified by sequence similarity; putative; Belongs to the eukaryotic ribosomal protein eS6 family. | 0.934 |
| csl4 | rrp4 | AF_0206 | AF_0492 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome (Probable); Belongs to the RRP4 family. | 0.998 |
| csl4 | rrp42 | AF_0206 | AF_0494 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | Conserved hypothetical protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Contributes to the structuring of the Rrp41 active site. | 0.999 |
| csl4 | rtcA | AF_0206 | AF_1435 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | Conserved hypothetical protein; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing (By similarity). | 0.940 |
| csl4 | tmcA | AF_0206 | AF_1522 | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | Conserved hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.794 |
| nep1 | AF_1805 | AF_0734 | AF_1805 | Conserved hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | Conserved hypothetical protein; Similar to GB:L77117 SP:Q57885 PID:1591147 percent identity: 48.52; identified by sequence similarity; putative. | 0.980 |
| nep1 | csl4 | AF_0734 | AF_0206 | Conserved hypothetical protein; Methyltransferase involved in ribosomal biogenesis. Specifically catalyzes the N1-methylation of the pseudouridine corresponding to position 914 in M.jannaschii 16S rRNA. | Predicted coding region AF_0206; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs (Probable). | 0.962 |
