STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1505Predicted coding region AF_1505; Hypothetical protein; identified by GeneMark; putative. (336 aa)    
Predicted Functional Partners:
AF_1502
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58707 PID:1591950 percent identity: 36.67; identified by sequence similarity; putative.
     
 0.958
AF_2197
Potassium channel, putative; Similar to GB:L77117 SP:Q57604 PID:1498918 percent identity: 24.55; identified by sequence similarity; putative.
 
     0.770
AF_1503
Predicted coding region AF_1503; Hypothetical protein; identified by GeneMark; putative.
       0.634
AF_1504
Predicted coding region AF_1504; Hypothetical protein; identified by GeneMark; putative.
       0.634
asd
Aspartate-semialdehyde dehydrogenase (asd); Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.446
pus10
Conserved hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
  
     0.429
AF_0859
Predicted coding region AF_0859; Hypothetical protein; identified by GeneMark; putative.
  
     0.419
AF_1507
Predicted coding region AF_1507; Hypothetical protein; identified by GeneMark; putative.
       0.400
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.