Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AF_1505Predicted coding region AF_1505; Hypothetical protein; identified by GeneMark; putative. (336 aa)    
Predicted Functional Partners:
AF_1502
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58707 PID:1591950 percent identity: 36.67; identified by sequence similarity; putative.
     
 0.942
AF_1503
Predicted coding region AF_1503; Hypothetical protein; identified by GeneMark; putative.
     
 0.942
AF_2197
Potassium channel, putative; Similar to GB:L77117 SP:Q57604 PID:1498918 percent identity: 24.55; identified by sequence similarity; putative.
 
     0.863
AF_1504
Predicted coding region AF_1504; Hypothetical protein; identified by GeneMark; putative.
       0.634
AF_1279
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58707 PID:1591950 percent identity: 30.05; identified by sequence similarity; putative.
       0.624
srp54
Signal recognition particle, subunit SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY (Probable). Belongs to the GTP-binding SRP family. SRP54 subfamily.
       0.569
asd
Aspartate-semialdehyde dehydrogenase (asd); Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.446
pus10
Conserved hypothetical protein; Responsible for synthesis of pseudouridine from uracil-54 and uracil-55 in the psi GC loop of transfer RNAs.
  
     0.429
AF_0859
Predicted coding region AF_0859; Hypothetical protein; identified by GeneMark; putative.
  
     0.419
AF_1507
Predicted coding region AF_1507; Hypothetical protein; identified by GeneMark; putative.
       0.400
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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