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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1509Predicted coding region AF_1509; Hypothetical protein; identified by GeneMark; putative. (262 aa)    
Predicted Functional Partners:
AF_1510
long-chain-fatty-acid--CoA ligase (fadD-6); Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096 percent identity: 35.99; identified by sequence similarity; putative.
     
 0.786
AF_1511
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58010 PID:1591298 percent identity: 37.68; identified by sequence similarity; putative.
  
    0.722
AF_1512
Conserved hypothetical protein; Similar to GB:L42023 SP:P44560 PID:1003276 PID:1222105 PID:1204445 percent identity: 27.64; identified by sequence similarity; putative.
       0.711
AF_1508
Predicted coding region AF_1508; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.621
truA
Pseudouridylate synthase I (truA) #; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
   
 
 0.567
AF_1513
Predicted coding region AF_1513; Hypothetical protein; identified by GeneMark; putative.
       0.525
AF_1507
Predicted coding region AF_1507; Hypothetical protein; identified by GeneMark; putative.
       0.460
AF_2430
lacZ expression regulatory protein (icc); Similar to GB:D16557 SP:P36650 PID:453396 PID:882562 GB:U00096 percent identity: 29.55; identified by sequence similarity; putative.
  
   0.441
rps17
SSU ribosomal protein S17P (rps17P); One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
   0.432
AF_1361
Arsenate reductase (arsC); Similar to PID:1653494 percent identity: 30.47; identified by sequence similarity; putative.
  
   0.430
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.