Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AF_1509Predicted coding region AF_1509; Hypothetical protein; identified by GeneMark; putative. (262 aa)    
Predicted Functional Partners:
AF_1510
long-chain-fatty-acid--CoA ligase (fadD-6); Similar to SP:P29212 GB:L02649 GB:X70994 PID:581070 GB:U00096 percent identity: 35.99; identified by sequence similarity; putative.
     
 0.779
AF_1511
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58010 PID:1591298 percent identity: 37.68; identified by sequence similarity; putative.
  
    0.711
AF_1512
Conserved hypothetical protein; Similar to GB:L42023 SP:P44560 PID:1003276 PID:1222105 PID:1204445 percent identity: 27.64; identified by sequence similarity; putative.
       0.702
AF_1508
Predicted coding region AF_1508; Hypothetical protein; identified by GeneMark; putative.
  
  
 0.626
AF_1513
Predicted coding region AF_1513; Hypothetical protein; identified by GeneMark; putative.
       0.522
AF_1507
Predicted coding region AF_1507; Hypothetical protein; identified by GeneMark; putative.
       0.460
asd
Aspartate-semialdehyde dehydrogenase (asd); Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
       0.416
AF_0254
NADH oxidase (noxA-1); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 35.14; identified by sequence similarity; putative.
   
 0.414
AF_0273
Sarcosine oxidase, subunit alpha (soxA); Similar to PID:927591 SP:Q46337 percent identity: 31.11; identified by sequence similarity; putative.
   
 0.414
AF_0395
NADH oxidase (noxA-2); Similar to GB:L77117 SP:Q58065 PID:1591361 percent identity: 35.45; identified by sequence similarity; putative.
   
 0.414
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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