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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1548Predicted coding region AF_1548; Hypothetical protein; identified by GeneMark; putative. (174 aa)    
Predicted Functional Partners:
hjc
Conserved hypothetical protein; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family.
     
 0.614
AF_1412
Predicted coding region AF_1412; Hypothetical protein; identified by GeneMark; putative.
  
     0.503
AF_1545
Predicted coding region AF_1545; Hypothetical protein; identified by GeneMark; putative.
       0.494
AF_1546
Conserved hypothetical protein; Similar to SP:P11666 PID:41424 PID:882453 GB:U00096 PID:1789291 percent identity: 33.47; identified by sequence similarity; putative.
       0.494
AF_1547
Conserved hypothetical protein; Similar to SP:P46227 PID:666972 percent identity: 36.59; identified by sequence similarity; putative.
       0.494
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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