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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1595Conserved hypothetical protein; Similar to GB:L77117 SP:Q58558 PID:1592323 percent identity: 35.88; identified by sequence similarity; putative. (304 aa)    
Predicted Functional Partners:
AF_0737
Predicted coding region AF_0737; Hypothetical protein; identified by GeneMark; putative.
  
 
 0.801
AF_1592
Conserved hypothetical protein; Similar to GB:L77117 SP:Q57605 PID:1590903 percent identity: 30.69; identified by sequence similarity; putative.
       0.790
AF_1593
Heme d1 biosynthesis protein (nirD); Similar to PID:1019807 SP:Q52522 percent identity: 29.41; identified by sequence similarity; putative.
       0.777
AF_1594
Heme biosynthesis protein (nirH); Similar to GP:1783280 percent identity: 25.20; identified by sequence similarity; putative.
       0.777
AF_1591
Predicted coding region AF_1591; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_0216
L-isoaspartyl protein carboxyl methyltransferase PimT, putative; Similar to GB:L77117 SP:Q57598 PID:1590899 percent identity: 35.51; identified by sequence similarity; putative.
 
  
 0.680
AF_2402
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58536 PID:1591770 percent identity: 51.68; identified by sequence similarity; putative.
  
 
 0.627
truD
Conserved hypothetical protein; Could be responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.
 
 
 0.587
truA
Pseudouridylate synthase I (truA) #; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs; Belongs to the tRNA pseudouridine synthase TruA family.
  
 
 0.564
rlmE
Cell division protein (ftsJ); Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.
  
  
 0.531
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.