STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AF_1654Predicted coding region AF_1654; Hypothetical protein; identified by GeneMark; putative. (329 aa)    
Predicted Functional Partners:
AF_1659
Predicted coding region AF_1659; Hypothetical protein; identified by GeneMark; putative.
       0.809
AF_1655
Signal sequence peptidase, putative; Similar to SP:P54506 PID:1303884 GB:AL009126 percent identity: 34.46; identified by sequence similarity; putative.
       0.789
AF_1657
Signal sequence peptidase (spc21); Similar to PID:1149703 percent identity: 46.97; identified by sequence similarity; putative.
       0.789
AF_1660
Predicted coding region AF_1660; Hypothetical protein; identified by GeneMark; putative.
       0.786
AF_1658
Predicted coding region AF_1658; Hypothetical protein; identified by GeneMark; putative.
       0.776
AF_1656
Predicted coding region AF_1656; Hypothetical protein; identified by GeneMark; putative.
       0.773
AF_1661
Predicted coding region AF_1661; Hypothetical protein; identified by GeneMark; putative.
       0.744
AF_1652
Prepro-subtilisin sendai, putative; Similar to PID:995964 percent identity: 35.59; identified by sequence similarity; putative.
       0.476
AF_1653
Alkaline serine protease (aprM); Similar to PID:1225905 percent identity: 44.51; identified by sequence similarity; putative.
       0.476
AF_1662
Predicted coding region AF_1662; Hypothetical protein; identified by GeneMark; putative.
       0.462
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.