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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVGStage V sporulation protein (spoVG); Could be involved in septation. (85 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase (ksgA); Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.
       0.715
AF_1780
Acetolactate synthase, large subunit (ilvB-2); Similar to GB:L77117 SP:Q57725 PID:1591003 percent identity: 32.06; identified by sequence similarity; putative; Belongs to the TPP enzyme family.
       0.612
AF_1777
Conserved hypothetical protein; Similar to GB:L42023 PID:1003114 PID:1222018 PID:1204364 SP:Q57354 percent identity: 34.16; identified by sequence similarity; putative.
 
     0.603
AF_1779
2-hydroxyacid dehydrogenase, putative; Similar to GB:L42023 SP:P45250 PID:1007767 PID:1221703 PID:1205791 percent identity: 37.64; identified by sequence similarity; putative; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.597
AF_1781
Nodulation protein NfeD (nfeD); Similar to PID:1145796 percent identity: 33.41; identified by sequence similarity; putative.
       0.573
AF_1782
Conserved hypothetical protein; Similar to GB:L77117 PID:1590998 percent identity: 34.72; identified by sequence similarity; putative.
       0.573
AF_1784
Protoporphyrinogen oxidase (hemK); Putative protein methyltransferase using S-adenosyl-L- methionine as the methyl donor. May methylate a Gln residue in target proteins (By similarity); Belongs to the eukaryotic/archaeal PrmC-related family.
       0.573
AF_0624
Conserved hypothetical protein; Similar to GB:L77117 SP:Q58203 PID:1499615 percent identity: 35.82; identified by sequence similarity; putative.
 
   
 0.477
gyrB
DNA gyrase, subunit B (gyrB); A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
      
 0.461
AF_0696
Cell division inhibitor (minD-1); Similar to GB:L77117 SP:Q57967 PID:1591252 percent identity: 54.96; identified by sequence similarity; putative.
     
 0.453
Your Current Organism:
Archaeoglobus fulgidus
NCBI taxonomy Id: 224325
Other names: A. fulgidus DSM 4304, Archaeoglobus fulgidus DSM 4304, Archaeoglobus fulgidus VC-16, Archaeoglobus fulgidus str. DSM 4304, Archaeoglobus fulgidus strain DSM 4304
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